PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g002200.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 353aa    MW: 39566.8 Da    PI: 6.6365
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g002200.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.15.7e-3153155196
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS..S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr..s 88 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++++++ l ++d++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  Csa03g002200.1  53 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSNNQNGTLLNFQDRNGKMWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGiGDesE 147
                     89***************************966677889*************************************************54344235 PP

                     EE..EEEE CS
              B3  89 efelvvkv 96 
                     + +l++ +
  Csa03g002200.1 148 RSKLYIDW 155
                     55555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.8E-4246160IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-3049141IPR015300DNA-binding pseudobarrel domain
CDDcd100174.93E-2751147No hitNo description
SMARTSM010196.3E-2253159IPR003340B3 DNA binding domain
PROSITE profilePS5086314.74853159IPR003340B3 DNA binding domain
PfamPF023622.7E-2853156IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDLSLAPTAT TSSDQEQDRD QELTSNIGAS SSSGTGNNLP MMMLPPPEKE HMFDKVVTPS  60
DVGKLNRLVI PKQHAERYFP LDSSNNQNGT LLNFQDRNGK MWRFRYSYWN SSQSYVMTKG  120
WSRFVKEKKL DAGDIVSFQR GIGDESERSK LYIDWRHRPD MSLVQAHQFG NFGFNFNFPT  180
TSQYSNRFLP LPEYNAVPIH RSLNIGNHQR SYYNNNNQRQ EFVGYGTYGN LAGRCYYTGS  240
PLDQRNIVGS EPLVIESVPV VPGRLTPVML PPPPSTAGKR LRLFGVNMEC GNDYSQQEES  300
WVVPRGEIGA SSSSSSALRL NLSTDHDDDG DGGDDDQFAK KGKSSFSLNF NP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-475016311122DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0073230.0AC007323.5 Genomic sequence for Arabidopsis thaliana BAC T25K16 from chromosome I, complete sequence.
GenBankAF1965660.0AF196566.1 Arabidopsis thaliana chromosome I, partial sequence.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankFJ8737330.0FJ873733.1 Arabidopsis thaliana ecotype Landsberg erecta NGATHA3 (NGA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010480723.10.0PREDICTED: B3 domain-containing transcription factor NGA3-like
RefseqXP_010480728.10.0PREDICTED: B3 domain-containing transcription factor NGA3-like
SwissprotQ9MAN10.0NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLV4MWI90.0V4MWI9_EUTSA; Uncharacterized protein
STRINGAT1G01030.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139901724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.10.0B3 family protein